UW-Madison LOCI
- 41 followers
- Madison, WI, USA
- https://loci.wisc.edu
- @UWMadisonLOCI
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Repositories
- qupath-extension-image-export-toolkit Public
QuIET - QuPath Image Export Toolkit: batch export images for publication or model training
- qupath-extension-dl-pixel-classifier Public
QuPath extension for deep learning pixel classification with Python training backend
- flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.
- qupath-extension-cell-analysis-tools Public
Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath
- microscope_command_server Public
Socket-based command server for remote microscope control and QuPath integration
- qupath-extension-tiles-to-pyramid Public
An extension to allow the creation of a pyramidal image file from individual tiles, based on known tile positions.
- qupath-extension-qpsc Public
Java based extension for QuPath allowing control of a microscope through MicroManager
- qupath-extension-fiber-analysis Public
QuPath extension for fiber straightness, TWOMBLI-derived morphometrics, and GLCM texture analysis on segmented collagen fibers (Java + Appose Python).
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