OMOP Analytics Workflow Documentation

A comprehensive documentation site introducing the analytics workflow for the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Overview

This repository contains educational materials and documentation for conducting real-world evidence studies using the OMOP CDM format. The site introduces a complete analytics ecosystem of R packages designed for observational health data analysis.

Libraries

Library	URL
CDMConnector	https://darwin-eu.github.io/CDMConnector/
CodelistGenerator	https://darwin-eu.github.io/CodelistGenerator/
CohortCharacteristics	https://darwin-eu.github.io/CohortCharacteristics/
CohortConstructor	https://ohdsi.github.io/CohortConstructor/
CohortCosts	https://iomedhealth.github.io/omopHeor/
CohortEconomics	https://iomedhealth.github.io/omopHeor/
CohortSurvival	https://darwin-eu.github.io/CohortSurvival/
CohortSymmetry	https://ohdsi.github.io/CohortSymmetry/
CohortUtilisation	https://iomedhealth.github.io/omopHeor/
DrugUtilisation	https://darwin-eu.github.io/DrugUtilisation/
EpiStandard	https://oxford-pharmacoepi.github.io/EpiStandard/
IncidencePrevalence	https://darwin-eu.github.io/IncidencePrevalence/
MeasurementDiagnostics	https://ohdsi.github.io/MeasurementDiagnostics/
omock	https://ohdsi.github.io/omock/
OmopConstructor	https://ohdsi.github.io/OmopConstructor/
OmopHelpers	https://github.com/iomedhealth/OmopHelpers
omopgenerics	https://darwin-eu.github.io/omopgenerics/
OmopSketch	https://ohdsi.github.io/OmopSketch/
OmopStudyBuilder	https://oxford-pharmacoepi.github.io/OmopStudyBuilder/
OmopViewer	https://ohdsi.github.io/OmopViewer/
PatientProfiles	https://darwin-eu.github.io/PatientProfiles/
PhenotypeR	https://ohdsi.github.io/PhenotypeR/
visOmopResults	https://darwin-eu.github.io/visOmopResults/

Publishing the Site

This Jekyll site is automatically built and deployed using GitHub Pages. To run the site locally for development:

1. Install dependencies: bundle install
2. Build the site: bundle exec jekyll build
3. Run locally: bundle exec jekyll serve

Changes pushed to the main branch will trigger a GitHub Actions workflow to publish the site.